uwgac/topmed-master:latest

Machine learning & AI

Data science

Manifest digest

sha256:f2445668725434ea6e4114af03f2857d411ab543f42a553f5856f2958e6e9428

OS/ARCH

linux/amd64

Compressed size

3.12 GB

Last pushed

over 4 years by smgogarten

Type

Image

Manifest digest

sha256:f2445668725434ea6e4114af03f2857d411ab543f42a553f5856f2958e6e9428

Image Layers

Image Layers

1ADD file ... in / 25.45 MB

2/bin/sh -c [ -z "$(apt-get34.54 KB

3/bin/sh -c set -xe &&844 B

4/bin/sh -c mkdir -p /run/systemd163 B

5CMD ["/bin/bash"]0 B

6ARG mkl_version=2018.1.1630 B

7ENV TZ=America/Los_Angeles0 B

8|1 mkl_version=2020.1.217 /bin/sh -c ln199 B

9|1 mkl_version=2020.1.217 /bin/sh -c apt-get744.98 MB

10|1 mkl_version=2020.1.217 /bin/sh -c apt-get1.33 MB

11|1 mkl_version=2020.1.217 /bin/sh -c echo533 B

12|1 mkl_version=2020.1.217 /bin/sh -c apt-get11.82 MB

13|1 mkl_version=2020.1.217 /bin/sh -c mkdir186 B

14ADD file ... in /usr/local/src/mkl/ 496.39 MB

15|1 mkl_version=2020.1.217 /bin/sh -c echo1002.48 MB

16|1 mkl_version=2020.1.217 /bin/sh -c apt-get140.34 KB

17|1 mkl_version=2020.1.217 /bin/sh -c apt-get22.47 MB

18|1 mkl_version=2020.1.217 /bin/sh -c update-alternatives4.97 KB

19|1 mkl_version=2020.1.217 /bin/sh -c update-alternatives4.99 KB

20/bin/sh -c apt-get update &&1.17 MB

21/bin/sh -c apt-get update &&1.34 MB

22ARG APP_BSRC=/usr/local/src0 B

23ARG ST_SRC=/usr/local/src/samtools0 B

24ARG APP_BBIN=/usr/local/bin0 B

25ARG ST_INSTALL=/usr/local0 B

26ARG THE_APP=htslib0 B

27|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools26.2 MB

28ARG THE_APP=samtools0 B

29|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools25.25 MB

30ARG THE_APP=bcftools0 B

31|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools18.32 MB

32|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools596.43 KB

33|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools0 B

34|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools186 B

35|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools19.97 MB

36|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools374.37 KB

37|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools10.17 MB

38|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools164.05 KB

39|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools840.19 KB

40|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools2.09 MB

41|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools492.49 KB

42|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools1.29 MB

43|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools1.09 MB

44|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools16.69 MB

45|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools1.62 MB

46ARG ra_version0 B

47ENV R_VERSION=4.1.10 B

48|1 ra_version=4.1.1 /bin/sh -c mkdir64.26 MB

49|1 ra_version=4.1.1 /bin/sh -c mkdir174 B

50|1 ra_version=4.1.1 /bin/sh -c apt-get12.74 MB

51|1 ra_version=4.1.1 /bin/sh -c echo125.32 MB

52|1 ra_version=4.1.1 /bin/sh -c ln206 B

53ARG p_version=4.1.1p0 B

54|2 p_version=4.1.1p ra_version=4.1.1 /bin/sh -c125.35 MB

55|2 p_version=4.1.1p ra_version=4.1.1 /bin/sh -c208 B

56|2 p_version=4.1.1p ra_version=4.1.1 /bin/sh -c184 B

57|2 p_version=4.1.1p ra_version=4.1.1 /bin/sh -c18.58 KB

58ADD file ... in /usr/local/bin/ 605 B

59|2 p_version=4.1.1p ra_version=4.1.1 /bin/sh -c195 B

60ARG git_branch0 B

61ENV ANALYSIS_PIPELINE_BRANCH=master0 B

62|1 git_branch=master /bin/sh -c echo0 B

63|1 git_branch=master /bin/sh -c mkdir103.13 MB

64|1 git_branch=master /bin/sh -c ln177 B

65|1 git_branch=master /bin/sh -c R_switch194 B

66|1 git_branch=master /bin/sh -c echo0 B

67|1 git_branch=master /bin/sh -c cd166.23 MB

68|1 git_branch=master /bin/sh -c R_switch198 B

69|1 git_branch=master /bin/sh -c echo0 B

70|1 git_branch=master /bin/sh -c cd166.21 MB

71ARG git_branch0 B

72ENV ANALYSIS_PIPELINE_BRANCH=master0 B

73RUN |1 git_branch=master /bin/sh -c32 B

74ENV AP_DIR=/usr/local/src/topmed_master0 B

75RUN |1 git_branch=master /bin/sh -c67.36 KB

76ENV AP_LINK=/usr/local/analysis_pipeline0 B

77RUN |1 git_branch=master /bin/sh -c167 B

78RUN |1 git_branch=master /bin/sh -c176 B

79ADD ap2batch.py /usr/local/bin # buildkit3 KB

80ADD jstats.py /usr/local/bin # buildkit2.99 KB

81RUN |1 git_branch=master /bin/sh -c5.59 KB

82RUN |1 git_branch=master /bin/sh -c261 B

83RUN |1 git_branch=master /bin/sh -c1.86 KB

84RUN |1 git_branch=master /bin/sh -c1.87 KB

85RUN |1 git_branch=master /bin/sh -c1.87 KB

86ADD umask.sh /usr/local/bin # buildkit242 B

87USER topmed:topmed0 B

88ENTRYPOINT ["/usr/local/bin/umask.sh"]0 B

Command

ADD file:1e8d02626176dc8141df3c0a1365774ce73d79934654fe24a4b1e7f173108232 in /