uwgac/topmed-devel:2.5.2

Languages & frameworks

Data science

Manifest digest

sha256:f82d3854a1ea37f72ed6c7dce7b1283e3031e6261dfff1051e3e11843439e273

OS/ARCH

linux/amd64

Compressed size

3.17 GB

Last pushed

about 7 years by rollinroy

Type

Image

Manifest digest

sha256:f82d3854a1ea37f72ed6c7dce7b1283e3031e6261dfff1051e3e11843439e273

Image Layers

Image Layers

1ADD file ... in / 30.87 MB

2/bin/sh -c set -xe &&847 B

3/bin/sh -c rm -rf /var/lib/apt/lists/*516 B

4/bin/sh -c mkdir -p /run/systemd163 B

5CMD ["/bin/bash"]0 B

6ARG mkl_version=2018.1.1630 B

7ENV TZ=America/Los_Angeles0 B

8|1 mkl_version=2019.2.187 /bin/sh -c ln199 B

9|1 mkl_version=2019.2.187 /bin/sh -c apt-get667.56 MB

10|1 mkl_version=2019.2.187 /bin/sh -c apt-get22.42 MB

11|1 mkl_version=2019.2.187 /bin/sh -c update-alternatives4.4 KB

12|1 mkl_version=2019.2.187 /bin/sh -c update-alternatives4.43 KB

13|1 mkl_version=2019.2.187 /bin/sh -c apt-get11.8 MB

14|1 mkl_version=2019.2.187 /bin/sh -c mkdir152 B

15ADD file ... in /usr/local/src/mkl/ 840.25 MB

16|1 mkl_version=2019.2.187 /bin/sh -c echo828.03 MB

17/bin/sh -c apt-get update &&5.17 MB

18/bin/sh -c apt-get update &&1.32 MB

19ARG APP_BSRC=/usr/local/src0 B

20ARG ST_SRC=/usr/local/src/samtools0 B

21ARG APP_BBIN=/usr/local/bin0 B

22ARG ST_INSTALL=/usr/local0 B

23ARG THE_APP=htslib0 B

24|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools26.2 MB

25ARG THE_APP=samtools0 B

26|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools25.26 MB

27ARG THE_APP=bcftools0 B

28|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools18.32 MB

29|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools596.63 KB

30|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools0 B

31|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools196 B

32|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools3.64 MB

33|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools16.71 MB

34|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools326.15 KB

35|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools823.87 KB

36|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools1.07 MB

37|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools16.69 MB

38|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools1.62 MB

39|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools1.34 MB

40|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools540 B

41|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools5.06 KB

42|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools847 B

43|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools852 B

44|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools223 B

45|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools1.54 KB

46|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools1.88 KB

47|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools1.88 KB

48ARG r_version=3.6.10 B

49|1 r_version=3.6.1 /bin/sh -c mkdir58.06 MB

50|1 r_version=3.6.1 /bin/sh -c mkdir149 B

51|1 r_version=3.6.1 /bin/sh -c echo116.92 MB

52|1 r_version=3.6.1 /bin/sh -c ln215 B

53ARG p_version=3.6.1p0 B

54|2 p_version=3.6.1p r_version=3.6.1 /bin/sh -c116.92 MB

55|2 p_version=3.6.1p r_version=3.6.1 /bin/sh -c211 B

56|2 p_version=3.6.1p r_version=3.6.1 /bin/sh -c189 B

57|2 p_version=3.6.1p r_version=3.6.1 /bin/sh -c18.4 KB

58ADD file ... in /usr/local/bin/ 611 B

59|2 p_version=3.6.1p r_version=3.6.1 /bin/sh -c201 B

60ARG r_version0 B

61ENV ANALYSIS_PIPELINE_BRANCH=devel0 B

62|1 r_version=3.6.1 /bin/sh -c echo0 B

63|1 r_version=3.6.1 /bin/sh -c mkdir86.46 MB

64|1 r_version=3.6.1 /bin/sh -c ln181 B

65|1 r_version=3.6.1 /bin/sh -c R_switch202 B

66|1 r_version=3.6.1 /bin/sh -c Rscript64.28 MB

67|1 r_version=3.6.1 /bin/sh -c cd107.04 MB

68|1 r_version=3.6.1 /bin/sh -c R_switch203 B

69|1 r_version=3.6.1 /bin/sh -c Rscript64.29 MB

70|1 r_version=3.6.1 /bin/sh -c cd107.06 MB

71/bin/bash7.06 MB

72ENV ANALYSIS_PIPELINE_BRANCH=devel0 B

73/bin/sh -c echo "Pulling $ANALYSIS_PIPELINE_BRANCH0 B

74/bin/sh -c cd /usr/local/src/topmed_${ANALYSIS_PIPELINE_BRANCH}/analysis_pipeline &&62.02 KB

75ADD file ... in /usr/local/bin 3.02 KB

76ADD file ... in /usr/local/bin 2.98 KB

Command

ADD file:529264c6593975a61f31e017eaf2e33d9ef126bde387f5d4136c60cf010a7383 in /