pennlinc/qsiprep_build:24.10.0

Manifest digest

sha256:0d2a43222f100313d3425a8656c251d81abe2c54db5296b84b61f3987a22b384

OS/ARCH

linux/amd64

Compressed size

7.34 GB

Last pushed

almost 2 years by matthewcieslak

Type

Image

Manifest digest

sha256:0d2a43222f100313d3425a8656c251d81abe2c54db5296b84b61f3987a22b384

Image Layers

Image Layers

1ADD file ... in / 25.48 MB

2CMD ["bash"]0 B

3ENV NVARCH=x86_640 B

4ENV NVIDIA_REQUIRE_CUDA=cuda>=11.1 brand=tesla,driver>=418,driver<419 brand=tesla,driver>=450,driver<4510 B

5ENV NV_CUDA_CUDART_VERSION=11.1.74-10 B

6ENV NV_CUDA_COMPAT_PACKAGE=cuda-compat-11-10 B

7ARG TARGETARCH0 B

8LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B

9RUN |1 TARGETARCH=amd64 /bin/sh -c6.88 MB

10ENV CUDA_VERSION=11.1.10 B

11RUN |1 TARGETARCH=amd64 /bin/sh -c10.29 MB

12RUN |1 TARGETARCH=amd64 /bin/sh -c186 B

13ENV PATH=/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B

14ENV LD_LIBRARY_PATH=/usr/local/nvidia/lib:/usr/local/nvidia/lib640 B

15COPY NGC-DL-CONTAINER-LICENSE / # buildkit6.28 KB

16ENV NVIDIA_VISIBLE_DEVICES=all0 B

17ENV NVIDIA_DRIVER_CAPABILITIES=compute,utility0 B

18ENV NV_CUDA_LIB_VERSION=11.1.1-10 B

19ENV NV_NVTX_VERSION=11.1.74-10 B

20ENV NV_LIBNPP_VERSION=11.1.2.301-10 B

21ENV NV_LIBNPP_PACKAGE=libnpp-11-1=11.1.2.301-10 B

22ENV NV_LIBCUSPARSE_VERSION=11.3.0.10-10 B

23ENV NV_LIBCUBLAS_PACKAGE_NAME=libcublas-11-10 B

24ENV NV_LIBCUBLAS_VERSION=11.3.0.106-10 B

25ENV NV_LIBCUBLAS_PACKAGE=libcublas-11-1=11.3.0.106-10 B

26ENV NV_LIBNCCL_PACKAGE_NAME=libnccl20 B

27ENV NV_LIBNCCL_PACKAGE_VERSION=2.8.4-10 B

28ENV NCCL_VERSION=2.8.4-10 B

29ENV NV_LIBNCCL_PACKAGE=libnccl2=2.8.4-1+cuda11.10 B

30ARG TARGETARCH0 B

31LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B

32RUN |1 TARGETARCH=amd64 /bin/sh -c1.41 GB

33RUN |1 TARGETARCH=amd64 /bin/sh -c61.93 KB

34COPY /opt/conda/envs/fslqsiprep /opt/conda/envs/fslqsiprep # buildkit647.19 MB

35ENV FSLDIR=/opt/conda/envs/fslqsiprep FSLOUTPUTTYPE=NIFTI_GZ FSLMULTIFILEQUIT=TRUE FSLLOCKDIR=0 B

36COPY /opt/ants /opt/ants # buildkit85.08 MB

37

ENV ANTSPATH=/opt/ants/bin LD_LIBRARY_PATH=/opt/ants/lib:/usr/local/nvidia/lib:/usr/local/nvidia/lib64 PATH=/opt/conda/envs/fslqsiprep/bin:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/ants/bin ANTS_DEPS=zlib1g-dev

0 B

38ENV QT_BASE_DIR=/opt/qt5120 B

39

ENV QTDIR=/opt/qt512 LD_LIBRARY_PATH=/opt/qt512/lib/x86_64-linux-gnu:/opt/qt512/lib:/opt/ants/lib:/usr/local/nvidia/lib:/usr/local/nvidia/lib64 PKG_CONFIG_PATH=/opt/qt512/lib/pkgconfig: PATH=/opt/qt512/bin:/opt/conda/envs/fslqsiprep/bin:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/ants/bin:/opt/dsi-studio

0 B

40COPY /opt/mrtrix3-latest /opt/mrtrix3-latest # buildkit39.89 MB

41COPY /opt/3Tissue /opt/3Tissue # buildkit35.53 MB

42

ENV PATH=/opt/qt512/bin:/opt/conda/envs/fslqsiprep/bin:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/ants/bin:/opt/dsi-studio:/opt/mrtrix3-latest/bin:/opt/3Tissue/bin MRTRIX3_DEPS=bzip2 ca-certificates curl

0 B

43COPY /opt/freesurfer /opt/freesurfer # buildkit639.87 MB

44ENV FSL_DIR=/opt/conda/envs/fslqsiprep OS=Linux FS_OVERRIDE=0 FIX_VERTEX_AREA=0 B

45

ENV SUBJECTS_DIR=/opt/freesurfer/subjects FUNCTIONALS_DIR=/opt/freesurfer/sessions MNI_DIR=/opt/freesurfer/mni LOCAL_DIR=/opt/freesurfer/local

0 B

46

ENV PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 MNI_PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 PATH=/opt/freesurfer/bin:/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/opt/qt512/bin:/opt/conda/envs/fslqsiprep/bin:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/ants/bin:/opt/dsi-studio:/opt/mrtrix3-latest/bin:/opt/3Tissue/bin FREESURFER_DEPS=bc

0 B

47RUN /bin/sh -c chmod a+rx28.87 KB

48COPY /opt/synb0 /opt/synb0 # buildkit366.51 MB

49ENV SYNB0_ATLASES=/opt/synb0/atlases0 B

50COPY /opt/afni-latest /opt/afni-latest # buildkit43.3 MB

51

ENV PATH=/opt/freesurfer/bin:/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/opt/qt512/bin:/opt/conda/envs/fslqsiprep/bin:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/ants/bin:/opt/dsi-studio:/opt/mrtrix3-latest/bin:/opt/3Tissue/bin:/opt/afni-latest AFNI_INSTALLDIR=/opt/afni-latest AFNI_IMSAVE_WARNINGS=NO

0 B

52COPY /src/TORTOISEV4/bin /src/TORTOISEV4/bin # buildkit26.53 MB

53COPY /src/TORTOISEV4/settings /src/TORTOISEV4/settings # buildkit3.9 KB

54COPY /usr/local/boost176 /usr/local/boost176 # buildkit14.57 MB

55COPY /src/TORTOISEV4/bin/*cuda /src/TORTOISEV4/bin/ # buildkit10.78 MB

56

ENV PATH=/opt/freesurfer/bin:/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/opt/qt512/bin:/opt/conda/envs/fslqsiprep/bin:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/ants/bin:/opt/dsi-studio:/opt/mrtrix3-latest/bin:/opt/3Tissue/bin:/opt/afni-latest:/src/TORTOISEV4/bin TORTOISE_DEPS=fftw3

0 B

57RUN /bin/sh -c useradd -m4.4 KB

58WORKDIR /home/qsiprep32 B

59COPY /opt/conda/envs/qsiprep /opt/conda/envs/qsiprep # buildkit3.32 GB

60COPY /home/qsiprep/.dipy /home/qsiprep/.dipy # buildkit111.22 MB

61

ENV PATH=/opt/conda/envs/qsiprep/bin:/opt/freesurfer/bin:/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/opt/qt512/bin:/opt/conda/envs/fslqsiprep/bin:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/ants/bin:/opt/dsi-studio:/opt/mrtrix3-latest/bin:/opt/3Tissue/bin:/opt/afni-latest:/src/TORTOISEV4/bin

0 B

62RUN /bin/sh -c apt-get update87.27 MB

63RUN /bin/sh -c echo "Downloading54.6 MB

64

ENV C3DPATH=/opt/convert3d-nightly PATH=/opt/convert3d-nightly/bin:/opt/conda/envs/qsiprep/bin:/opt/freesurfer/bin:/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/opt/qt512/bin:/opt/conda/envs/fslqsiprep/bin:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/ants/bin:/opt/dsi-studio:/opt/mrtrix3-latest/bin:/opt/3Tissue/bin:/opt/afni-latest:/src/TORTOISEV4/bin

0 B

65RUN /bin/sh -c apt-get update41.15 MB

66RUN /bin/sh -c npm install48.15 MB

67RUN /bin/sh -c curl -o25.06 MB

68RUN /bin/sh -c add-apt-repository ppa:beineri/opt-qt-5.12.8-bionic103.61 MB

69COPY /opt/dsi-studio /opt/dsi-studio # buildkit199.15 MB

70RUN /bin/sh -c add-apt-repository ppa:ubuntu-toolchain-r/test1.41 MB

71WORKDIR /opt/art108 B

72

ENV PATH=/opt/art/bin:/opt/convert3d-nightly/bin:/opt/conda/envs/qsiprep/bin:/opt/freesurfer/bin:/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/opt/qt512/bin:/opt/conda/envs/fslqsiprep/bin:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/ants/bin:/opt/dsi-studio:/opt/mrtrix3-latest/bin:/opt/3Tissue/bin:/opt/afni-latest:/src/TORTOISEV4/bin

0 B

73RUN /bin/sh -c cd /opt/art1.27 MB

74ENV HOME=/home/qsiprep MKL_NUM_THREADS=1 OMP_NUM_THREADS=1 MRTRIX_NTHREADS=10 B

75WORKDIR /root/32 B

76COPY scripts/fetch_templates.py fetch_templates.py # buildkit1.53 KB

77RUN /bin/sh -c python fetch_templates.py44.6 MB

78RUN /bin/sh -c strip --remove-section=.note.ABI-tag2.6 MB

79RUN /bin/sh -c mkdir -p204 B

Command

ADD file:fc5d658c47ede58827812b75a311353be776e41e2dd339b8906839527c9b5247 in /