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johnegarza/vep_locale_helper-cwl:v1

Manifest digest

sha256:724af1962b574380170ce4853a49278ed5f1545c89c5087abb73e1350682afe5

OS/ARCH

linux/amd64

Compressed size

649.21 MB

Last pushed

about 8 years by johnegarza

Type

Image

Manifest digest

sha256:724af1962b574380170ce4853a49278ed5f1545c89c5087abb73e1350682afe5

Image Layers

Image Layers

1ADD file ... in / 45.55 MB
2/bin/sh -c set -xe &&846 B
3/bin/sh -c rm -rf /var/lib/apt/lists/*620 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'849 B
5/bin/sh -c mkdir -p /run/systemd169 B
6CMD ["/bin/bash"]0 B
7/bin/sh -c apt-get update &&174.81 MB
8/bin/sh -c cpanm DBI DBD::mysql4.31 MB
9/bin/sh -c useradd -r -m4.37 KB
10/bin/sh -c usermod -a -G751 B
11USER [vep]0 B
12ENV HOME=/home/vep0 B
13WORKDIR /home/vep0 B
14/bin/sh -c mkdir -p src135 B
15WORKDIR /home/vep/src0 B
16/bin/sh -c git clone https://github.com/Ensembl/ensembl.git60.56 MB
17/bin/sh -c git clone https://github.com/Ensembl/ensembl-vep.git86.86 MB
18WORKDIR /home/vep/src0 B
19/bin/sh -c ensembl-vep/travisci/get_dependencies.sh185.35 MB
20ENV PERL5LIB=:/home/vep/src/bioperl-live-release-1-6-9240 B
21ENV KENT_SRC=/home/vep/src/kent-335_base/src0 B
22ENV HTSLIB_DIR=/home/vep/src/htslib0 B
23ENV MACHTYPE=x86_640 B
24ENV CFLAGS=-fPIC0 B
25ENV DEPS=/home/vep/src0 B
26USER [root]0 B
27/bin/sh -c ensembl-vep/travisci/build_c.sh17.64 MB
28WORKDIR /home/vep/src/htslib0 B
29/bin/sh -c make install4.27 MB
30WORKDIR /home/vep/src0 B
31/bin/sh -c git clone https://github.com/bioperl/bioperl-ext.git1.23 MB
32WORKDIR /home/vep/src/bioperl-ext/Bio/Ext/Align0 B
33/bin/sh -c perl -pi -e"s|(cd691 B
34/bin/sh -c perl Makefile.PL8.57 KB
35/bin/sh -c make804.54 KB
36/bin/sh -c make install321.98 KB
37WORKDIR /home/vep/src0 B
38/bin/sh -c cpanm --installdeps --with-recommends12.09 MB
39/bin/sh -c cpanm --installdeps --with-recommends6.06 MB
40USER [vep]0 B
41/bin/sh -c echo >> $HOME/.profile560 B
42ENV PATH=/home/vep/src/ensembl-vep:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
43WORKDIR /home/vep/src/ensembl-vep0 B
44/bin/sh -c chmod u+x *.pl19.57 KB
45/bin/sh -c ./INSTALL.pl -a a15.04 MB
46MAINTAINER Susanna Kiwala <[email protected]>0 B
47LABEL version=90 description=VEP image0 B
48/bin/sh -c mkdir -p /home/vep/Plugins143 B
49WORKDIR /home/vep/Plugins0 B
50/bin/sh -c wget https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/90/Downstream.pm2.09 KB
51/bin/sh -c wget https://raw.githubusercontent.com/griffithlab/pVACtools/master/tools/pvacseq/VEP_plugins/Wildtype.pm1.03 KB
52MAINTAINER John Garza <[email protected]>0 B
53LABEL description=VEP image with0 B
54USER root0 B
55/bin/sh -c apt-get update -y33.97 MB
56/bin/sh -c ln -sf /usr/share/zoneinfo/America/Chicago157 B
57/bin/sh -c echo "America/Chicago" >153 B
58/bin/sh -c dpkg-reconfigure --frontend noninteractive348.03 KB
59/bin/sh -c ln -s /opt/vep/ensembl-vep/vep183 B
60USER vep0 B

Command

ADD file:280a445783f309c90ab928883d98e4326c1fbe19927c8a555da41bcb74c71a45 in /