Sign inSign up

broadinstitute/fungal_gatk4:gatk4.1.8.1

Manifest digest

sha256:959579b694ec4b0427856c56289918fddcc7cd4e4cb60576e0517ba15ac93a8b

OS/ARCH

linux/amd64

Compressed size

914.53 MB

Last pushed

over 2 years by ncauldronbroad

Type

Image

Manifest digest

sha256:959579b694ec4b0427856c56289918fddcc7cd4e4cb60576e0517ba15ac93a8b

Image Layers

Image Layers

1ADD file ... in / 43.28 MB
2CMD ["bash"]0 B
3/bin/sh -c apt-get update &&10.3 MB
4/bin/sh -c set -ex; if4.14 MB
5/bin/sh -c set -eux; apt-get4.89 MB
6ENV LANG=C.UTF-80 B
7ENV JAVA_HOME=/usr/local/openjdk-80 B
8ENV PATH=/usr/local/openjdk-8/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
9/bin/sh -c { echo '#/bin/sh';221 B
10ENV JAVA_VERSION=8u2320 B
11ENV JAVA_BASE_URL=https://github.com/AdoptOpenJDK/openjdk8-upstream-binaries/releases/download/jdk8u232-b09/OpenJDK8U-jre_0 B
12ENV JAVA_URL_VERSION=8u232b090 B
13/bin/sh -c set -eux; dpkgArch="$(dpkg38.33 MB
14ENV TERM=xterm-256color0 B
15LABEL SAMTOOLS_VER=1.100 B
16LABEL BWA_VER=0.7.120 B
17LABEL GATK_VER=4.1.4.10 B
18LABEL [email protected]0 B
19/bin/sh -c apt-get update &&293.79 MB
20/bin/sh -c echo 'install.packages(c("ggplot2"), repos="http://cran.us.r-project.org",100.73 MB
21/bin/sh -c cd /opt &&10.92 MB
22/bin/sh -c cd /opt &&10.77 MB
23/bin/sh -c cd /opt &&1.77 MB
24ENV PATH=/opt/bwa-0.7.17:/usr/local/openjdk-8/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
25/bin/sh -c cd /opt &&395.61 MB
26ENV PATH=/opt/gatk-4.1.8.1:/opt/bwa-0.7.17:/usr/local/openjdk-8/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B

Command

ADD file:152359c10cf61d80091bfd19e7e1968a538bebebfa048dca0386e35e1e999730 in /