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mgibio/smahtqc:v6.6

Manifest digest

sha256:3154c8d1f85a282904bb8fd1c8e3b1fca68d594420ee4ca3c3bdede3d0300d81

OS/ARCH

linux/amd64

Compressed size

1.72 GB

Last pushed

3 months by ebelter

Type

Image

Manifest digest

sha256:3154c8d1f85a282904bb8fd1c8e3b1fca68d594420ee4ca3c3bdede3d0300d81

Image Layers

Image Layers

1ADD file ... in / 47.29 MB
2CMD ["bash"]0 B
3/bin/sh -c set -eux; apt-get22.94 MB
4/bin/sh -c apt-get update &&61.16 MB
5/bin/sh -c set -ex; apt-get201.29 MB
6ENV PATH=/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
7ENV LANG=C.UTF-80 B
8RUN /bin/sh -c set -eux;5.87 MB
9ENV GPG_KEY=7169605F62C751356D054A26A821E680E5FA63050 B
10ENV PYTHON_VERSION=3.12.00 B
11RUN /bin/sh -c set -eux;21.47 MB
12RUN /bin/sh -c set -eux;232 B
13ENV PYTHON_PIP_VERSION=23.2.10 B
14ENV PYTHON_GET_PIP_URL=https://github.com/pypa/get-pip/raw/4cfa4081d27285bda1220a62a5ebf5b4bd749cdb/public/get-pip.py0 B
15ENV PYTHON_GET_PIP_SHA256=9cc01665956d22b3bf057ae8287b035827bfd895da235bcea200ab3b811790b60 B
16RUN /bin/sh -c set -eux;2.55 MB
17CMD ["python3"]0 B
18ENV LC_ALL=C0 B
19ENV TZ=America/Chicago0 B
20RUN /bin/sh -c ln -snf192 B
21RUN /bin/sh -c apt update335.3 MB
22ARG CROMWELL_VERSION=900 B
23WORKDIR /apps/cromwell/146 B
24RUN |1 CROMWELL_VERSION=90 /bin/sh -c229.3 MB
25RUN |1 CROMWELL_VERSION=90 /bin/sh -c108.6 MB
26WORKDIR /apps/build/146 B
27COPY ./ ./ # buildkit1.46 MB
28RUN |1 CROMWELL_VERSION=90 /bin/sh -c26.39 MB
29RUN |1 CROMWELL_VERSION=90 /bin/sh -c257.38 KB
30WORKDIR /0 B
31RUN |1 CROMWELL_VERSION=90 /bin/sh -c143 B
32ENV PATH=/apps/scripts:/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
33RUN /bin/sh -c apt update19.65 MB
34ARG samtools_version=1.210 B
35WORKDIR /tmp/build/150 B
36RUN |1 samtools_version=1.21 /bin/sh -c50.01 MB
37RUN |1 samtools_version=1.21 /bin/sh -c37.89 MB
38RUN |1 samtools_version=1.21 /bin/sh -c172.7 MB
39RUN |1 samtools_version=1.21 /bin/sh -c223.52 MB
40WORKDIR /0 B
41RUN |1 samtools_version=1.21 /bin/sh -c148 B
42RUN /bin/sh -c apt update33.4 MB
43WORKDIR /0 B
44ENV PATH=/apps/scripts:/usr/lib/plink:/apps/scripts:/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
45ENV SMAHT_DB_URL=sqlite:////storage2/fs1/epigenome/Active/raw_data_smaht/smaht_qc/db0 B
46WORKDIR /tmp/build/smaht166 B
47COPY ./ ./ # buildkit38.16 MB
48WORKDIR /apps/smaht/144 B
49RUN /bin/sh -c rsync -vzr5.28 KB
50WORKDIR /tmp/build/smaht/container/32 B
51RUN /bin/sh -c mv scripts/*2.06 KB
52RUN /bin/sh -c python3 -m115.16 MB
53WORKDIR /tmp/build/smaht/container/python32 B
54RUN /bin/sh -c python3 -m1.48 MB
55WORKDIR /tmp/build/smaht/pipelines32 B
56RUN /bin/sh -c mkdir -p13.52 KB
57WORKDIR /tmp/build/32 B
58RUN /bin/sh -c git clone323.36 KB
59WORKDIR /apps/32 B
60RUN /bin/sh -c find wdl/pipelines/181.95 KB
61WORKDIR /0 B
62RUN /bin/sh -c rm -rf93 B
63ENV PATH=/apps/scripts:/apps/scripts:/usr/lib/plink:/apps/scripts:/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B

Command

ADD file:39d17d28c5de0bd629e5b7c8190228e5a445d61d668e189b7523e90e68f78244 in /